Bedtools

Bootstrapper's Introductory Course on using the commandline tool bedtools

Course Details

Session Date Location Topics
Session I Monday October 26, 2015, 5:30pm-7pm Amp III S6-102 File formats,Running bedtools,Bedtobam/Bamtobed
Session II Wednesday October 28, 2015, 5:30pm-7pm Amp III S6-102 Intersect, Jaccard & Merge,Complement & Subtract
Session III Monday November 2, 2015, 5:30pm-7pm Amp III S6-102 Coverage/multicov,Genomecvg,Shuffle
Session IV Wednesday November 4, 2015, 5:30pm-7pm Amp III S6-102 Map

Course Materials

Pre-class Assignments:

Sessions:

Session Slides In Class Exercies Assignments Files
Session 1
Session 2
Session 3
Session 4

Additional Resources:

Contacts

Course Instructors:

  • Jill Moore
    Jill.Moore@umassmed.edu
  • Arjan van der Velde
    Arjan.VanDerVelde@umassmed.edu
  • Henry Pratt
    Henry.Pratt@umassmed.edu
  • Michael Purcaro
    Michael.Purcaro@umassmed.edu

Teaching Assistant:

  • Nick Hathaway
    Nicholas.Hathaway@umassmed.edu